Following is the list of Universities associated with NTS Pakistan, universities in Peshawar are given in bold letters.
- Quaid-i-Azam University Islamabad
- (Quaid-i-Azam School of Management Sciences & School of Economics, Department of Pharmacy)
- CECOS University, Peshawar
- COMSATS Institute of Information Technology
- Fatima Jinnah Women University, Rawalpindi
- Federal Urdu University ( Islamabad Campus )
- ( B.Sc Electrical Engineering )
- Forman Christian College University
- GIFT University, Gujranwala
- Gomal University, D.I.Khan
- Government College University, Faisalabad
- Institute of Business & Mangement (IB&M) UET, Lahore
- Institute of Management Sciences, Peshawar
- Institute of Southern Punjab, Multan
- Institute of Space Technology, Islamabad
- International Islamic University, Islamabad
- (Department of Computer Science, Department of Electronics Engineering)
- Islamia University Bahawalpur, Bahawalpur
- Kinnaird College For Women, Lahore
- Kohat University of Science & Technology, Kohat
- NAMAL College, Mianwali
- National Textile University, Faisalabad
- National University of Computer & Emerging Sciences (FAST) ( All Campuses )
- Pakistan Atomic Energy Commission (Talent Scholarship)
- Silver Oak Institute of Management Sciences & Information Technology (SIMSIT) Islamabad
- The University of Azad Jammu & Kashmir (Faculty of Agriculture, Rawalakot)
- UET, Peshawar (Non Engineering Programmes)
- University of Gujrat, Gujrat
- University of Management & Technology, Lahore
- University of Peshawar, Peshawar
- University of Science & Technology, Bannu
- University of Swat, Swat
